InterMine 3.0 – Solr search

InterMine 3.0 is now available and features a brand new search powered by Solr.

Default search configuration will work well, but Solr allows for endless configuration for your specific needs.

Now the first search after deployment is instant, you can inspect the search index directly (via http://localhost:8983/solr/) and there’s a facet web service (via /service/facet-list and /service/facets?q=gene). Certain bugs, e.g. searching for the gene “OR”, are also now fixed.

New Configuration Option – optimize

There is a new keyword search configuration setting: index.optimize. If set to `true`, reorganises the index so chunks are placed together in storage which might improve the search time. (Similar to defragmentation of a hard disk.) See the configuration docs for more details.

Docs

Installing Solr

Configuring the keyword search

InterMine 3.0 upgrade instructions | release notes

A big thank you to our clever and hard-working 2018 Google Summer of Code student Arunan Sugunakumar — who did the bulk of the work as part of his summer project. Great job!

Advertisements

New Blog!

We’ve decided to streamline our blogging experience a little bit. Rather than maintaining several separate but mostly similar blogs for HumanMine, FlyMine, and InterMine, this blog will act as a combined stream.

Don’t worry – this doesn’t mean you’ll be forced to view irrelevant updates if you’re only interested in one of the sub categories. WordPress is great about filtering via tag or category. Here are a few quick links:

InterMine-specific updates: https://intermineorg.wordpress.com/category/intermine/

FlyMine-specific updates: https://intermineorg.wordpress.com/category/flymine/

HumanMine-specific updates: https://intermineorg.wordpress.com/category/humanmine/ (It’s empty now, but coming soon!)