New FlyMine build: FlyMine 49, now with added JBrowse!

FlyMine has been updated to the latest version of FlyBase. All other data sets have also been updated to the newest versions, we have fixed a few bugs and made the JBrowse displayer available again. See the data sources page for a full list of the current datasets and their versions.

All data can be accessed through our comprehensive library of template searches or by building your own queries using the query builder.

If you have any questions, please see our docs and do not hesitate
to contact us should you require any further assistance. For help and
feedback please email support@intermine.org or visit our contact page.

[Post originally drafted by Sergio Contrino]

HumanMine 5.0 released!

HumanMine has been updated to the latest version of NCBI Entrez Gene. All other data sets have also been updated to the newest versions and we have fixed a few bugs. See the data sources page for a full list of data and their versions. All data can be accessed through our comprehensive library of template searches or by building your own queries using the query builder.

 

New Data Source: GTEx

We added a new expression data set, GTEx. Here’s an example search:

Gene –> Tissue Expression

Tissue –> Gene expression

Data model changes!

Our data model has changed slightly to make querying easier between mines.

• Protein molecular weight is a float instead of an integer
• We’ve added URLs for GO term evidence codes
• Sequence Ontology (the basis for the InterMine data model) is updated, so lots of new data types added.

See our previous blog post for complete details of updates.

 

We have docs and videos, and for a full list of data sources available in HumanMine see the data sources list.

However, please do not hesitate to contact us should you require any further assistance. For all types of help and feedback email info@intermine.org.