InterMine 3.1.2 – patch release

We’ve released a small batch of bug fixes and small features. Thank you so much to our contributors: Sam Hokin, Arunan Sugunakumar and Joe Carlson!

Features

  • Templates can be tagged by any user, not just the super user. (Via webservice only – for now)

Fixes

  • When searching our docs, some times the “.html” extension was dropped. This was fixed by our beautiful documentation hosters – readthedocs.org
  • Installing the “bio” project via Gradle does not fail if you do not have the test properties file.
  • Gradle logs error fixed
  • Removed old GAF 1.0 code
  • Fixed XML library issue:  java.lang.ClassCastException for org.apache.xerces
  • Set converter.class correctly
  • Updated the protein atlas expression graph
  • Handle NULL values returned by NCBI web services
  • Updated Solr to support new Solr versions
  • Removed unneeded Gretty plugin
  • Better error handling for CHEBI web services
  • Publication abstract is longer than postgres index
  • Removed phenotype key, it’s not in the core model and has conflicting key
  • Updated ObjectStoreSummary to handle ignored fields consistently.

Upcoming Releases

InterMine 4.0 is scheduled for release the week of 7 May 2019.

Docs

To update your mine with these new changes, see upgrade instructions. This is a non-disruptive release.

See release notes for detailed information.

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