Data – fixes
- FIX:Â D. melanogaster genes from FlyBase and UniProt are now merged correctly.
- FIX: Missing orthologues from D. melanogaster to A. gambiae are now loaded.
Release 2.1
- Data – new sources
- Added D. melanogaster whole genome amplimer tiling path (Genetics Department, Cambridge, UK)
- Data – fixes
- Fixed an off by one error with chromosome locations of FlyReg binding sites
- GBrowse images now appear on Transcript details page
- Removed duplicate GO (Gene Ontology) Ontology object
- Sequences are no longer a mix of upper and lower case – now all lower case
- Added CDS and Translation objects for each A. gambiae Transcript
- INDAC oligos – Transcripts now correctly merged with other D. melanogaster annotation
- All genome annotation features now have a chromosomeLocation field
- Data – known issues
- Information from FlyBase missing for some D. melanogaster genes due to problems reading FlyBase gff3 (fixed in FlyBase release 4.1)
- INDAC, FlyReg and Genetics Dept (Cambridge) InfoSource objects are duplicated
- Interface – new features
- Template queries now work with bags – an attribute can be constrained to be in/not-in a bag
- Template search facility added. Users can search public and private templates
- All string matches in FlyMine queries are now case insensitive
- Performance improvements while paging through results/collection tables
- Collection/bag table pages are now bookmarkable
- Keywords can be attached to template queries
- Interface – fixes
- Users with javascript disabled can now run queries
- Fixed bug that stopped the user from creating certain loop-queries
