HumanMine 3.0

HumanMine has been updated to the latest version of NCBI Entrez Gene. All other data sets have also been updated to the newest versions and we have fixed a few bugs. See the data sources page for a full list of data and their versions. All data can be accessed through our comprehensive library of template searches or by building your own queries using the query builder.

 

New Data Source: ClinVar

We added a new data source linking genes with their alleles and associated diseases. Here’s an example query:

http://www.humanmine.org/humanmine/template.do?name=Gene_Alleles_Disease

Human Data Sources Switch

We switched Entrez and Ensembl gene identifiers around. Please see our blog for details. If you have questions or problems, please contact us.

Complex Interaction Viewer

We’ve added a nice viewer for complexes. Source: http://interactionviewer.org

71e3498e-18f5-11e6-8422-5e4486ab4b67

 

We have docs and videos, and for a full list of data sources available in HumanMine see the data sources list.

However, please do not hesitate to contact us should you require any further assistance. For all types of help and feedback email support@humanmine.org

New Blog!

We’ve decided to streamline our blogging experience a little bit. Rather than maintaining several separate but mostly similar blogs for HumanMine, FlyMine, and InterMine, this blog will act as a combined stream.

Don’t worry – this doesn’t mean you’ll be forced to view irrelevant updates if you’re only interested in one of the sub categories. WordPress is great about filtering via tag or category. Here are a few quick links:

InterMine-specific updates: https://intermineorg.wordpress.com/category/intermine/

FlyMine-specific updates: https://intermineorg.wordpress.com/category/flymine/

HumanMine-specific updates: https://intermineorg.wordpress.com/category/humanmine/ (It’s empty now, but coming soon!)