InterMine 3.1.1 – patch release

We’ve released a small batch of bug fixes and small features. Thank you so much to our contributors: Sam Hokin, Paulo Nuin and Joel Richardson!

Features

  • Added access to the GFF header in the GFF parser
  • GFF sequence handler has access to feature now
  • Added DOES NOT CONTAIN constraint
  • Added a few end points for BlueGenes

Fixes

  • InterPro source handles DTD correctly
  • Updated to new GitHub URL for Gretty Plugin
  • Fixed OMIM link outs
  • NCBI going to update their GFF files (at our request! Thanks Wayne!)
    • fix spelling on feature “DNaseI_hypersensitive_site” i
    • change “recombination_region” to “recombination_feature”
  • Updated external links on enrichment widget
  • Handle NULL search index correctly
  • Fix publication with NULL title
  • Fixed log library dependency conflict
  • Removed deprecated Yahoo login link
  • Fixed Panther source to handle proteins

Upcoming Releases

  • 3.1.2 – More small bug fixes
  • 4.0.0 – FAIR release

Docs

To update your mine with these new changes, see upgrade instructions. This is a non-disruptive release.

See release notes for detailed information.

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